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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article"><?xmltex \bartext{Research article}?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">ESD</journal-id><journal-title-group>
    <journal-title>Earth System Dynamics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ESD</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Earth Syst. Dynam.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">2190-4987</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/esd-12-1139-2021</article-id><title-group><article-title>Trivial improvements in predictive skill due to direct reconstruction of the global carbon cycle</article-title><alt-title>Trivial improvements in predictive skill due to direct reconstruction of the global carbon cycle</alt-title>
      </title-group><?xmltex \runningtitle{Trivial improvements in predictive skill due to direct reconstruction of the global carbon cycle}?><?xmltex \runningauthor{A.~Spring~et~al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Spring</surname><given-names>Aaron</given-names></name>
          <email>aaron.spring@mpimet.mpg.de</email>
        <ext-link>https://orcid.org/0000-0003-0216-2241</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Dunkl</surname><given-names>István</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1503-3783</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Li</surname><given-names>Hongmei</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2912-1837</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff3">
          <name><surname>Brovkin</surname><given-names>Victor</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6420-3198</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Ilyina</surname><given-names>Tatiana</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3475-4842</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Max Planck Institute for Meteorology, Hamburg, Germany</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>International Max Planck Research School of Earth System Modelling, IMPRS, Hamburg, Germany</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Center for Earth System Research and Sustainability, University of Hamburg, Hamburg, Germany</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Aaron Spring (aaron.spring@mpimet.mpg.de)</corresp></author-notes><pub-date><day>15</day><month>November</month><year>2021</year></pub-date>
      
      <volume>12</volume>
      <issue>4</issue>
      <fpage>1139</fpage><lpage>1167</lpage>
      <history>
        <date date-type="received"><day>8</day><month>February</month><year>2021</year></date>
           <date date-type="accepted"><day>2</day><month>October</month><year>2021</year></date>
           <date date-type="rev-recd"><day>5</day><month>July</month><year>2021</year></date>
           <date date-type="rev-request"><day>18</day><month>February</month><year>2021</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2021 Aaron Spring et al.</copyright-statement>
        <copyright-year>2021</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021.html">This article is available from https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021.html</self-uri><self-uri xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021.pdf">The full text article is available as a PDF file from https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e132">State-of-the art climate prediction systems have recently included a carbon component. While physical-state variables are assimilated in reconstruction
simulations, land and ocean biogeochemical state variables adjust to the state acquired through this assimilation indirectly instead of being
assimilated themselves. In the absence of comprehensive biogeochemical reanalysis products, such an approach is pragmatic. Here we evaluate a potential
advantage of having perfect carbon cycle observational products to be used for direct carbon cycle reconstruction.</p>

      <p id="d1e135">Within an idealized perfect-model framework, we reconstruct a 50-year target period from a control simulation. We nudge variables from this target
onto arbitrary initial conditions, mimicking an assimilation simulation generating initial conditions for hindcast experiments of prediction
systems. Interested in the ability to reconstruct global atmospheric <inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, we focus on the global carbon cycle reconstruction performance
and predictive skill.</p>

      <p id="d1e149">We find that indirect carbon cycle reconstruction through physical fields reproduces the target variations. While reproducing the large-scale
variations, nudging introduces systematic regional biases in the physical-state variables to which biogeochemical cycles react very
sensitively. Initial conditions in the oceanic carbon cycle are sufficiently well reconstructed indirectly. Direct reconstruction slightly improves
initial conditions. Indirect reconstruction of global terrestrial carbon cycle initial conditions are also sufficiently well reconstructed by the
physics reconstruction alone. Direct reconstruction negligibly improves air–land <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux. Atmospheric <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is indirectly very well
reconstructed. Direct reconstruction of the marine and terrestrial carbon cycles slightly improves reconstruction while establishing
persistent biases. We find improvements in global carbon cycle predictive skill from direct reconstruction compared to indirect
reconstruction. After correcting for mean bias, indirect and direct reconstruction both predict the target similarly well and only moderately worse
than perfect initialization after the first lead year.</p>

      <p id="d1e174">Our perfect-model study shows that indirect carbon cycle reconstruction yields satisfying initial conditions for global <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux and
atmospheric <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Direct carbon cycle reconstruction adds little improvement to the global carbon cycle because imperfect reconstruction
of the physical climate state impedes better biogeochemical reconstruction. These minor improvements in initial conditions yield little improvement
in initialized perfect-model predictive skill. We label these minor improvements due to direct carbon cycle reconstruction “trivial”, as mean
bias reduction yields similar improvements. As reconstruction biases in real-world prediction systems are likely stronger, our results add
confidence to the current practice of indirect reconstruction in carbon cycle prediction systems.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<?pagebreak page1140?><sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e208">Predicting variations in weather and climate yields numerous benefits for economic, social, and environmental decision-making
<xref ref-type="bibr" rid="bib1.bibx36" id="paren.1"/>. Carbon cycle prediction systems have the ability to predict the near-term evolution of <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fluxes
<xref ref-type="bibr" rid="bib1.bibx28 bib1.bibx30 bib1.bibx31" id="paren.2"/> and atmospheric <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx52 bib1.bibx18" id="paren.3"/> to constrain the large internal variability
of the global carbon cycle <xref ref-type="bibr" rid="bib1.bibx53" id="paren.4"/>. Predictions require a forecasting model and initial conditions representing observations. However, due
to sparse and temporally incomplete records, there is currently no global biogeochemical reanalysis product to initialize Earth system models
(ESMs). Therefore, direct initialization of the carbon cycle, i.e., assimilating carbon cycle variables in ESMs, is not possible. State-of-the-art
carbon prediction systems initialize the carbon cycle indirectly by nudging the physical climate only, assuming that carbon cycle follows the
initialized climate indirectly. However, this indirect carbon cycle initialization leaves the initial conditions of the carbon cycle unconstrained.</p>
      <p id="d1e246">Here, we test how well indirect and direct carbon cycle reconstructions in an ESM initialize the carbon cycle in a perfect-model framework
(Table <xref ref-type="table" rid="Ch1.T1"/> presents an overview of which variables are reconstructed in which simulation). We use the term reconstruction
to describe methods of initialization of climate and the carbon cycle. Reconstructions aim to reproduce the evolution of the target, like a reanalysis
product, in the ESM. Furthermore, we use the term “carbon cycle” to describe the processes exchanging carbon across the surface boundary between
land, atmosphere and ocean, represented here by the air–land and air–sea <inline-formula><mml:math id="M8" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fluxes. We ask the following research questions.
<list list-type="bullet"><list-item>
      <p id="d1e264">How well can initial conditions be reconstructed in the global carbon cycle?</p></list-item><list-item>
      <p id="d1e268">Can initialization of the carbon cycle improve the predictive skill of the carbon cycle?</p></list-item></list></p>
      <p id="d1e271">In this perfect-model framework, we have perfect knowledge about the ground truth and a perfect model. Literally speaking, this study ask how well
perfect observations can be reconstructed in an ESM.</p>
      <p id="d1e274">Originally, data assimilation is used to align the model state to an observations-based state, generally a reanalysis product
<xref ref-type="bibr" rid="bib1.bibx47 bib1.bibx35" id="paren.5"/>. However, here we use the same data assimilation technique to assess how well variables can be reconstructed in an
idealized setup.</p>
      <p id="d1e281">Thus, reconstruction in a climate model interferes with the freely running climate model, yielding gains and drawbacks. The main advantage of climate
reconstruction is that the reconstruction forces the climate model to follow the target <xref ref-type="bibr" rid="bib1.bibx19 bib1.bibx35" id="paren.6"/>. The main handicap associated
with reconstruction is that the mass conservation is violated and that the model dynamics and feedbacks are obstructed <xref ref-type="bibr" rid="bib1.bibx59" id="paren.7"/>. Consequently,
circulation fields may change, and this has severe consequences for the biogeochemical tracer distributions in the ocean and carbon pools on land
because they are so sensitive and adapted to the previous climate state <xref ref-type="bibr" rid="bib1.bibx55" id="paren.8"/>. Therefore, reconstructions often lead to biases. A
partial solution can be bias removal by post-processing, which is feasible if the bias does not change the climate or ecosystem regime all
together. Another solution is omitting nudging in regions strongly biased by reconstruction such as the tropics, as demonstrated by
<xref ref-type="bibr" rid="bib1.bibx39" id="paren.9"/>. Even if biogeochemical reanalysis products were available, it is unclear whether the reconstruction benefits correct these
handicaps.</p>
      <p id="d1e296">The lack of reanalysis products available for the reconstruction of carbon cycle initial conditions is often assumed to be a weakness of current
predictions systems <xref ref-type="bibr" rid="bib1.bibx27 bib1.bibx49 bib1.bibx31 bib1.bibx30 bib1.bibx28 bib1.bibx18" id="paren.10"/>, but to our knowledge an elaborate assessment is
missing. The literature presents two alternative approaches to test the quality of reconstructed initial conditions.</p>
      <p id="d1e302">In a perfect-model study, <xref ref-type="bibr" rid="bib1.bibx50" id="text.11"/> nudge only ocean surface temperature, salinity and sea ice and assess how well this surface
reconstruction penetrates into the subsurface ocean physics without addressing biogeochemistry in their analysis. This target reconstruction approach
allows us to directly assess the quality of reconstructed initial conditions, which is useful and practical to know for forecasters issuing a forecast.
<xref ref-type="bibr" rid="bib1.bibx32" id="text.12"/> use an equivalent simulation design, so-called observing system simulation experiments (OSSEs), in which they assimilate sea surface
temperature, sea surface salinity and sea surface height.</p>
      <p id="d1e311">In a recent study, <xref ref-type="bibr" rid="bib1.bibx9" id="text.13"/> ask whether the initial conditions of ocean biogeochemistry or the initial conditions of ocean physics have a
stronger influence on multi-year predictions using perfect-model twin perturbed initial conditions experiments. In the first set of hindcasts, they
take identical initial conditions of ocean physics to ensure identical climate evolution but completely different states from different members
for ocean biogeochemistry. In the other set of hindcasts, they slightly perturb the ocean physics to force members on differing climate evolutions
while keeping the ocean biogeochemistry initial conditions identical. They find that ocean biogeochemistry initial conditions did not affect
predictive skill later than the first lead year. Their approach asks the more theoretical question of whether initial conditions of ocean biogeochemistry
matter compared to ocean physics initial conditions.</p>
      <p id="d1e317">We go beyond previous studies by using the methodology of <xref ref-type="bibr" rid="bib1.bibx50" id="text.14"/>, with the aim of understanding the quality of initial condition
reconstructions. In contrast to <xref ref-type="bibr" rid="bib1.bibx9" id="text.15"/>, we aim to answer the questions about the quality of the initial conditions produced by different
reanalysis approaches. We expand the scope by<?pagebreak page1141?> addressing the global carbon cycle, including the land, ocean and atmospheric compartments and the
interactive exchange of <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fluxes between them. We then assess the influence of these previously reconstructed carbon cycle initial
conditions for initialized predictions of the natural carbon sinks and atmospheric <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. We focus on the global carbon cycle because the
land and ocean carbon cycle control the internal variability of atmospheric <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx11" id="paren.16"/>.</p>
      <p id="d1e363">After explaining the approach of target reconstruction in Sect. <xref ref-type="sec" rid="Ch1.S2"/>, we separate reconstruction and its implication on predictive skill
into two parts. We first evaluate reconstruction performance. We start with the physical reconstruction in Sect. <xref ref-type="sec" rid="Ch1.S3.SS1"/>. Then we show how the
ocean and land carbon cycles are reconstructed indirectly and how direct reconstruction can improve initialization in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>
and <xref ref-type="sec" rid="Ch1.S3.SS3"/>. We analyze the combined effects of the ocean and land reconstruction in the atmosphere in Sect. <xref ref-type="sec" rid="Ch1.S3.SS4"/>. Following this, we assess the impact of different reconstruction methods on initial condition predictive skill in
Sect. <xref ref-type="sec" rid="Ch1.S4"/>. Finally, the main findings and conclusions of this study are summarized in Sect. <xref ref-type="sec" rid="Ch1.S5"/>.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Model description</title>
      <p id="d1e396">We use the Max Planck Institute ESM <xref ref-type="bibr" rid="bib1.bibx34" id="paren.17"><named-content content-type="post">MPI-ESM</named-content></xref>, which was also used in the Coupled Model Intercomparison Project Phase 6 (CMIP6)
framework <xref ref-type="bibr" rid="bib1.bibx8" id="paren.18"/>. We run the model MPI-ESM1-2-LR, the low-resolution configuration with 63 spherical harmonics in the atmosphere,
a horizontal resolution of about 1.8<inline-formula><mml:math id="M12" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> on land and about 1.5<inline-formula><mml:math id="M13" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> in the ocean with daily coupling of the compartments. The time steps of
the atmosphere–land and the ocean are 600 and 4320 <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula>, respectively. We run the model with a prognostic atmospheric <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratio
under preindustrial conditions (<italic>esm-piControl</italic>).</p>
      <p id="d1e448">The marine biogeochemical cycle model HAMOCC <xref ref-type="bibr" rid="bib1.bibx17" id="paren.19"/> is embedded in the ocean general circulation model MPIOM <xref ref-type="bibr" rid="bib1.bibx22" id="paren.20"/>. HAMOCC
includes carbonate chemistry and an extended NPZD-type cycle, including nutrient–light–temperature co-limitation and nitrogen-fixating cyanobacteria
<xref ref-type="bibr" rid="bib1.bibx41" id="paren.21"/>. The land carbon cycle model JSBACH includes dynamic vegetation, wildfires, and soil carbon decomposition and storage
<xref ref-type="bibr" rid="bib1.bibx46" id="paren.22"/>. The atmospheric general circulation model ECHAM6 transports the three-dimensional atmospheric prognostic atmospheric
<inline-formula><mml:math id="M16" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> tracer with a flux-form semi-Lagrangian scheme <xref ref-type="bibr" rid="bib1.bibx29 bib1.bibx54" id="paren.23"/>.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Perfect-model target reconstruction framework</title>
      <p id="d1e486">Simulations in a perfect-model target reconstruction framework aim to reproduce the target climate evolution <xref ref-type="bibr" rid="bib1.bibx12 bib1.bibx50" id="paren.24"/> but
are started from an independent initial state. Therefore, the initial conditions of the reconstruction simulation and the target do not match, but
both the target and initial conditions share the same climatology. We choose a 50-year target period from model years 1850 to 1900 and an uncorrelated
restart file from model year 2005 from the preindustrial control simulation (esm-piControl) submitted for the MPI-ESM1-2-LR model for C4MIP
<xref ref-type="bibr" rid="bib1.bibx21" id="paren.25"/> in CMIP6 <xref ref-type="bibr" rid="bib1.bibx8" id="paren.26"/>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e501">Overview of different reconstruction simulations. The first column title marks the labels of the experiments as used in the paper. The reconstruction strength of relaxation timescales is noted in brackets, where <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> denotes hours and <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula> days. The land carbon cycle is not dynamically reconstructed at each time step but by a hard reset of restart files each 1 January from the target run. These land restart files include carbon and nitrogen pools, soil physics (moisture, temperature, snow cover), vegetation cover (plant functional types distribution) and canopy (leaf area index).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="justify" colwidth="25mm"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="30mm"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="19mm"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="19mm"/>
     <oasis:colspec colnum="5" colname="col5" align="justify" colwidth="27mm"/>
     <oasis:colspec colnum="6" colname="col6" align="justify" colwidth="30mm"/>
     <oasis:thead>
       <oasis:row rowsep="1">

         <oasis:entry colname="col1"/>

         <oasis:entry namest="col2" nameend="col6" align="center">Reconstructed variables for each realm (nudging relaxation time-scale) </oasis:entry>

       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>

         <?xmltex \mrwidth{25mm}?><oasis:entry rowsep="1" colname="col1" morerows="1">Reconstruction<?xmltex \hack{\newline}?> simulations</oasis:entry>

         <oasis:entry colname="col2">Atmosphere:</oasis:entry>

         <oasis:entry colname="col3">Ocean (60 <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula>):</oasis:entry>

         <oasis:entry colname="col4">Sea ice (60 <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula>):</oasis:entry>

         <oasis:entry colname="col5">Ocean carbon (60 <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula>):</oasis:entry>

         <oasis:entry colname="col6">Land:</oasis:entry>

       </oasis:row>
       <oasis:row rowsep="1">

         <oasis:entry colname="col2">temperature (24 <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>),<?xmltex \hack{\hfill\break}?>surface pressure (24 <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>),<?xmltex \hack{\hfill\break}?>vorticity (6 <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>),<?xmltex \hack{\hfill\break}?>divergence (48 <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>)</oasis:entry>

         <oasis:entry colname="col3">temperature,<?xmltex \hack{\hfill\break}?>salinity</oasis:entry>

         <oasis:entry colname="col4">concentration,<?xmltex \hack{\hfill\break}?>thickness</oasis:entry>

         <oasis:entry colname="col5">DIC,<?xmltex \hack{\hfill\break}?>alkalinity</oasis:entry>

         <oasis:entry colname="col6">all JSBACH<?xmltex \hack{\hfill\break}?>(reset restart files 1 Jan)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1"><inline-formula><mml:math id="M26" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">indirect</mml:mi><mml:mi mathvariant="normal">ATMonly</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col2"><inline-formula><mml:math id="M27" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col3"/>

         <oasis:entry colname="col4"/>

         <oasis:entry colname="col5"/>

         <oasis:entry colname="col6"/>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1"><inline-formula><mml:math id="M28" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">indirect</mml:mi><mml:mi mathvariant="normal">OCEANonly</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col2"/>

         <oasis:entry colname="col3"><inline-formula><mml:math id="M29" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col4"/>

         <oasis:entry colname="col5"/>

         <oasis:entry colname="col6"/>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1">indirect</oasis:entry>

         <oasis:entry colname="col2"><inline-formula><mml:math id="M30" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col3"><inline-formula><mml:math id="M31" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col4"><inline-formula><mml:math id="M32" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5"/>

         <oasis:entry colname="col6"/>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1">direct</oasis:entry>

         <oasis:entry colname="col2"><inline-formula><mml:math id="M33" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col3"><inline-formula><mml:math id="M34" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col4"><inline-formula><mml:math id="M35" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M36" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col6"><inline-formula><mml:math id="M37" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>

       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e812">In order to assess how many variables are needed to sufficiently reconstruct climate and biogeochemical cycles, we first perform reconstruction
simulations only reconstructing physical state variables in atmosphere and/or ocean (Table <xref ref-type="table" rid="Ch1.T1"/>). In these simulations,
the carbon cycle is only indirectly affected by the reconstruction of physical variables. In further simulations, we test how much carbon cycle states
improve with respect to the target when carbon cycle state variables are reconstructed directly.</p>
      <p id="d1e818">Newtonian or <xref ref-type="bibr" rid="bib1.bibx15" id="text.27"/> relaxation, which is often called “nudging”, is a simple four-dimensional assimilation technique that
dynamically reconstructs variables in an ESM. A non-physical relaxation term with relaxation coefficient <inline-formula><mml:math id="M38" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> (units  <inline-formula><mml:math id="M39" display="inline"><mml:mrow class="unit"><mml:mn mathvariant="normal">1</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) is added to
the prognostic equation to drag the model variable <inline-formula><mml:math id="M40" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>, which is subject to model forcing <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> towards its target <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>:
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M43" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi>X</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>X</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>X</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mi>X</mml:mi><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e928">For reconstruction of the dynamics of the ocean, we reconstruct three-dimensional temperature, salinity, and sea ice concentration and
thickness (Table <xref ref-type="table" rid="Ch1.T1"/>). We label this reconstruction as indirect (Table <xref ref-type="table" rid="Ch1.T1"/>) from the carbon
cycle's perspective, as the carbon cycle is not reconstructed directly but instead indirectly follows the reconstructed physical
climate. Observational ocean data are often not available at each model time step. Therefore, we interpolate (without adjustments preserving the
temporal mean) monthly model target output to daily frequency as has been done in previous studies <xref ref-type="bibr" rid="bib1.bibx42" id="paren.28"/>. We choose a 60 <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula> ocean
relaxation time (converted to units <inline-formula><mml:math id="M45" display="inline"><mml:mrow class="unit"><mml:mn mathvariant="normal">1</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) like <xref ref-type="bibr" rid="bib1.bibx50" id="text.29"/> did in their perfect-model target reconstruction study. Reconstructions
towards observations usually choose a stronger nudging strength <xref ref-type="bibr" rid="bib1.bibx42 bib1.bibx23" id="paren.30"/>.</p>
      <?pagebreak page1142?><p id="d1e970">We reconstruct the physics of the atmosphere by nudging temperature, vorticity, divergence and the logarithm of surface pressure
<xref ref-type="bibr" rid="bib1.bibx43" id="paren.31"/>. The high-frequency 6-hourly output serves as the target and is nudged into all 63 spherical harmonics. Temperature and the
logarithm of surface pressure are nudged with a relaxation timescale of 24 <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>, vorticity is nudged with a relaxation timescale of 6 <inline-formula><mml:math id="M47" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>,
and divergence is nudged with a relaxation timescale of 48 <inline-formula><mml:math id="M48" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>. Relaxation coefficients are converted to units of <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="unit"><mml:mn mathvariant="normal">1</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and are taken
from previously used setups <xref ref-type="bibr" rid="bib1.bibx44 bib1.bibx43 bib1.bibx28" id="paren.32"/>. Nudging the atmosphere with these quite short relaxation times is similar to the
forced simulations, such as the Model Intercomparison Projects for ocean (OMIP) <xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx38" id="paren.33"/> and land (LMIP) <xref ref-type="bibr" rid="bib1.bibx56" id="paren.34"/> and
Global Carbon Budget <xref ref-type="bibr" rid="bib1.bibx10" id="paren.35"/> simulations, where (atmospheric) external boundary forcing drives the carbon cycle.</p>
      <p id="d1e1030">For reconstructions of oceanic carbon cycle, we use the same nudging approach and strength as for physical ocean reconstruction but on different
variables. To reconstruct the components of the carbonate system, we nudge three-dimensional dissolved inorganic carbon (DIC) and total alkalinity
(Table <xref ref-type="table" rid="Ch1.T1"/>).</p>
      <p id="d1e1035">Unfortunately, there is no nudging module available in the land surface model JSBACH. The current structure of JSBACH code is not flexible enough to
allow frequent rewriting of physical variable fields, such as soil moisture or temperature, with external data. Here, we choose to manually reset the
initial conditions every 1 January to the target values instead of the dynamic reconstruction at each time step.  We thereby reconstruct land
biogeochemistry and land surface physics such as soil moisture by resetting all restart variables every year. In Appendix
Sect. <xref ref-type="sec" rid="App1.Ch1.S4"/>, we provide several sensitivity analyses by resetting land only every 2 or 5 years and resetting the ocean every
year in the same way.</p>
      <p id="d1e1040">We compare the target with reconstructions in the various metrics showing different attributes of tracking performance: bias, anomaly correlation
coefficient and root-mean-square error. The non-physical relaxation terms in the prognostic equations can disturb the dynamics in the ESM and
introduce biases defined as the differences in the reconstruction compared to the freely running target over time. The anomaly correlation coefficient
skill score (ACC) shows the linear association between the reconstruction and the target over time and therefore measures synchronous evolution while
ignoring bias. The root-mean-square error (RMSE) takes into account bias and measures the second-order Euclidian distance between reconstruction and
target simulation over time. Under the assumption that persistent biases can be removed by post-processing, we also assess RMSE after having the mean
monthly bias removed. For equations please consult Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>. We calculate tracking performance over running 10-year
chunks to capture the variability within tracking performance and reduce the influence of drifts over time.</p>
      <p id="d1e1046">How do we evaluate that a reconstruction is good enough? While good enough is a subjective judgment, we resample the target simulation along the time
dimension with a block length of 10 years to check the metric of two randomly compared 10-year chunks. We consider the 95th quantile threshold for
ACC and 5th quantile threshold for the remaining distance-based metrics as a baseline of internal variability to be a good-enough reconstruction
<xref ref-type="bibr" rid="bib1.bibx6" id="paren.36"/>, which we will refer to as “resampling threshold” in the following.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Perfect-model predictive skill framework</title>
      <p id="d1e1060">In the second part of this study, we perform initialized perfect-model experiments <xref ref-type="bibr" rid="bib1.bibx52" id="paren.37"><named-content content-type="pre">as in</named-content></xref>. The simulations in the perfect-model
framework are started from the indirect and direct reconstructions as well the target representing perfect initial conditions. We take
19 initialization states chosen every second 1 January between 1860 and 1896, after allowing a 10-year adjustment phase after reconstructions were
started. From each of those states from different reconstruction simulations, we fork five ensemble members and simulate 3 lead years. The
perfectly initialized ensembles are started from the target initial conditions without any previous reconstruction simulation. We generate ensemble
members by perturbing the stratospheric horizontal diffusion by a factor of 1.0000{member} in the first year, e.g., the factor is 1.00005 for the fifth
ensemble member. This<?pagebreak page1143?> member-generating approach provokes only tiny initial perturbations to the climate system as the ocean and land initial
conditions remain identical.</p>
      <p id="d1e1068">We compute predictive skill as the RMSE between the ensemble mean and the target as verification
<xref ref-type="bibr" rid="bib1.bibx57 bib1.bibx20" id="paren.38"/> (Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>). Please find additional details about the predictive skill metrics and the uninitialized
bootstrapping in <xref ref-type="bibr" rid="bib1.bibx52" id="text.39"/>. Acknowledging that our reconstruction simulation developed biases and that biases are commonly reduced by
post-processing in predictability research, we also apply a simple lead-time-dependent mean bias reduction to the initialized ensembles to show
whether skill improvements go beyond what a simple post-processing could deliver. For each initialization in turn, we first calculate the mean bias
for all but that given initialization and then remove that mean bias from the given initialization. This implies using information about future
initializations as in bias-reduced hindcasts <xref ref-type="bibr" rid="bib1.bibx33" id="paren.40"/>. We also evaluate predictive skill from a perfectly initialized ensemble, which are
started from the perfect initial conditions taken from target simulation, whereas the ensembles from reconstructed initial conditions are biased with
respect to the target (Fig. <xref ref-type="fig" rid="Ch1.F5"/>). This initialized predictive skill is also compared with uninitialized
ensembles randomly generated from the target simulation representing ensembles without common initialization and hence no memory. This uninitialized
reference skill is used in predictability research community to assign whether the skill increase stems from initialization.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Reconstruction in an Earth system model</title>
      <p id="d1e1093">As the carbon cycle is sensitive to the climate evolution, we first assess how well the physical climate is reconstructed. Therefore, we first
evaluate the physical climate state after reconstruction in Sect. <xref ref-type="sec" rid="Ch1.S3.SS1"/>. Afterwards, we assess how these different reconstructions of
physical climate indirectly reconstruct the ocean, land and atmospheric carbon cycle in subsections and how direct reconstruction could improve
initial conditions in Sects. <xref ref-type="sec" rid="Ch1.S3.SS2"/>–<xref ref-type="sec" rid="Ch1.S3.SS4"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e1104">Spatial distribution of the bias (construction–target) <bold>(a–f)</bold> and anomaly correlation coefficient (ACC) <bold>(g–l)</bold> of different indirect carbon cycle reconstructions relative to the target over 10-year running windows of annual means (see Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>). The reconstruction metrics for 2 <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> temperature are shown for the <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">indirect</mml:mi><mml:mi mathvariant="normal">ATMonly</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <bold>(d, j)</bold>, indirect<sub>OCEAN only</sub> <bold>(e, k)</bold> and indirect reconstruction <bold>(f, l)</bold>. Because of identical reconstruction skill for all indirect methods, only one indirect reconstruction is shown for other variables, zonal westward 10 <inline-formula><mml:math id="M52" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> wind <bold>(a, g)</bold> and meridional northward 10 <inline-formula><mml:math id="M53" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> wind <bold>(b, h)</bold> and precipitation <bold>(c, i)</bold>. Gray stippling shows where the metric exceeds the 5th-percentile (for <bold>a–f</bold>) or 95th-percentile (for <bold>g–l</bold>) threshold from random target block resampling, i.e., the reconstruction is not significantly better than internal variability.</p></caption>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f01.png"/>

      </fig>

<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Reconstruction of physical climate</title>
      <p id="d1e1192">Reconstructing the ocean and/or the atmosphere systematically disturbs the freely evolving model, which leads to annual mean biases with respect to
the original target. We identify atmospheric circulation represented by winds and resulting precipitation and temperature to be descriptive for the
impact of circulation on the carbon cycle. The gray stippling in Fig. <xref ref-type="fig" rid="Ch1.F1"/> shows where this reconstruction bias is
larger than the randomly resampling fifth-percentile mean absolute error threshold and therefore labels the reconstruction as being not significantly better
than internal variability.</p>
      <p id="d1e1197">All reconstructions yield identical results for winds and precipitation tracking performance. Reconstructing the ocean and/or the atmosphere
introduces biases of up to 0.6 <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula> in zonal and 0.9 <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula> in meridional 10 <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> wind speed, depicting a southward shift of the
Intertropical Convergence Zone (ITCZ). This bias results in a significant weakening of the Equator-ward latitudinal winds, whereas extratropical
latitudinal winds intensify (Fig. <xref ref-type="fig" rid="Ch1.F1"/>a). The intensification and Equator-ward shift of the easterly trade winds
and weakening of the Southern Hemisphere westerlies are both not significant (Fig. <xref ref-type="fig" rid="Ch1.F1"/>b). Precipitation is
heavily impacted by these biases in atmospheric transport across many regions of the globe. Precipitation significantly shifts southward at the
Equator with changes of more than 1 <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and increases in western Canada, western Russia and southern Australia
(Fig. <xref ref-type="fig" rid="Ch1.F1"/>c). Unlike the previously described variables, the 2 <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> temperature bias depends on whether the
ocean is reconstructed or not. Just reconstructing the ocean temperature and salinity (indirect<sub>OCEAN only</sub>) leads to small, negative
and significant biases in the tropical Atlantic and West Pacific. In addition, northern and southern Africa, as well as the Amazon and China, are subject to a
small cold bias, whereas Saharan Africa and Southeast Asia get substantially warmer. The polar regions cool significantly
(Fig. <xref ref-type="fig" rid="Ch1.F1"/>d). Only reconstructing the atmosphere (<inline-formula><mml:math id="M59" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">indirect</mml:mi><mml:mi mathvariant="normal">ATMonly</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) leads to a warm bias across nearly
all oceans but less cold bias over northern and southern Africa and China (Fig. <xref ref-type="fig" rid="Ch1.F1"/>e). Combining
atmosphere and ocean reconstruction (indirect) reduces the overall temperature bias, especially over the oceans
(Fig. <xref ref-type="fig" rid="Ch1.F1"/>f).</p>
      <p id="d1e1285">While the biases explained above are liabilities of reconstructions, the linear association measured by the anomaly correlation coefficient (ACC)
benefits from reconstruction. Reconstruction recreates climate variability of the target (Fig. <xref ref-type="fig" rid="Ch1.F1"/>g–l). The
running 10-year correlation between the target and the reconstruction in atmospheric variables is in most grid cells above 0.4 and significantly
better than the randomly resampling threshold. Reconstruction over the oceans is more successful in the tropics than in the extratropics, where the
Northern Hemisphere and Southern Hemisphere midlatitude westerlies have low but still significant correlation. Generally, the atmosphere above the ocean is
better reconstructed than above land, showing the stabilizing effect of an internally consistent ocean reconstruction on the atmosphere
(Fig. <xref ref-type="fig" rid="Ch1.F1"/>g–l). The Southern Hemisphere tropical convergence of winds is well reconstructed, but the meridional
winds in central Canada and tropical Africa are not significantly reconstructed (Fig. <xref ref-type="fig" rid="Ch1.F1"/>g). In addition, zonal winds
across North America, southern Africa and Siberia have low correlation with the target, but the tropical zonal winds are very well reconstructed
(Fig. <xref ref-type="fig" rid="Ch1.F1"/>h). Precipitation from the central Atlantic over central Africa is reconstructed worse than the
resampling threshold, and the extratropical westerlies have low correlation with the target
(Fig. <xref ref-type="fig" rid="Ch1.F1"/>i). Temperature is well reconstructed in the tropical oceans
(Fig. <xref ref-type="fig" rid="Ch1.F1"/>j–l). Reconstructing both atmosphere and ocean (indirect) improves 2 <inline-formula><mml:math id="M60" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> temperature correlation
better than only reconstructing a single realm. The indirect carbon cycle reconstruction is<?pagebreak page1144?> significantly better than the resampling threshold except
in central Africa, where the ITCZ shift changes the climate regime (Fig. <xref ref-type="fig" rid="Ch1.F1"/>l).</p>
      <p id="d1e1311">This physical bias due to reconstruction, especially in the tropics, can be explained by the sensitivity of atmosphere–ocean coupling to perturbation
induced by nudging <xref ref-type="bibr" rid="bib1.bibx37" id="paren.41"/>. Additionally nudging sea surface height might improve the El Niño–Southern Oscillation (ENSO) thermocline feedback <xref ref-type="bibr" rid="bib1.bibx32" id="paren.42"/>. The
reconstruction of ocean and atmospheric variables is perfectly aligned with the model climatology into that same model. Hence, the reconstruction
error does not arise from inconsistent observations but from the perturbed interaction of atmospheric and oceanic dynamics. While reconstructing an
increasing set of variables shows that nudging can be an efficient way to reconstruct variability <xref ref-type="bibr" rid="bib1.bibx19" id="paren.43"/>, this reconstruction is biasing
the climate state in the tropics at the same time <xref ref-type="bibr" rid="bib1.bibx59" id="paren.44"><named-content content-type="pre">also explained in</named-content></xref>.</p>
      <p id="d1e1329">Nudging atmospheric and ocean dynamics including sea ice all at once (indirect reconstruction), as is often done in state-of-the-art carbon cycle
prediction systems, brings large-scale improvements over random resampling and atmosphere-only (indirect<inline-formula><mml:math id="M61" display="inline"><mml:msub><mml:mi/><mml:mtext>ATM only</mml:mtext></mml:msub></mml:math></inline-formula>) reconstruction, but
strong regional biases remain (Fig. <xref ref-type="fig" rid="Ch1.F1"/>).</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Reconstruction of the oceanic carbon cycle</title>
      <p id="d1e1352">How do these regional physical biases affect the reconstruction of oceanic carbon cycle? In order to assess the tracking performance in the indirect
reconstruction of the oceanic carbon cycle, we focus on air–sea <inline-formula><mml:math id="M62" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux and surface oceanic <inline-formula><mml:math id="M63" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> as the state variable of the
ocean carbon sink, which is the oceanic driver of air–sea <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux <xref ref-type="bibr" rid="bib1.bibx31" id="paren.45"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e1395">Spatial distribution of the bias between the target and different indirect carbon cycle reconstruction methods over 10-year running windows of annual means (see Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>). Columns show the different carbon cycle reconstruction methods (see Table <xref ref-type="table" rid="Ch1.T1"/>). Rows show the different variables: the ocean carbon cycle is represented by <bold>(a–c)</bold> the partial pressure of surface <inline-formula><mml:math id="M65" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the ocean (<inline-formula><mml:math id="M66" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and <bold>(d–f)</bold> surface air–sea <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux (negative values indicate carbon uptake by the ocean); the land carbon cycle is represented by <bold>(g–i)</bold> the vegetation carbon pools and <bold>(j–l)</bold> air–land surface <inline-formula><mml:math id="M68" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux (negative values indicate carbon uptake by land); and the atmospheric carbon is represented by <bold>(m–o)</bold> the atmospheric <inline-formula><mml:math id="M69" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratio (<inline-formula><mml:math id="M70" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">X</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>). Gray stippling shows where the bias exceeds the 5th-percentile mean absolute error threshold from random target block resampling, i.e., the reconstruction is not significantly better than internal variability.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f02.png"/>

        </fig>

      <?pagebreak page1145?><p id="d1e1495">Reconstructing only the atmospheric dynamics (<inline-formula><mml:math id="M71" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">indirect</mml:mi><mml:mi mathvariant="normal">ATMonly</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) leads to strong positive biases across large parts of the global ocean,
which can be reduced by also reconstructing oceanic temperature and salinity (indirect) (Fig. <xref ref-type="fig" rid="Ch1.F2"/>a, b, d, and e). The weakening
of the Southern Hemisphere westerly winds decreases the magnitude of air–sea <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux, but more importantly reduces the Southern Hemisphere
overturning circulation and upwelling of carbon-rich waters, which leads to increased Southern Ocean carbon uptake (Fig. <xref ref-type="fig" rid="Ch1.F2"/>b
and e). The intensification of easterly trade winds (Fig. <xref ref-type="fig" rid="Ch1.F1"/>b) strengthens upwelling and therefore higher
<inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the tropical Atlantic (Fig. <xref ref-type="fig" rid="Ch1.F2"/>b) <xref ref-type="bibr" rid="bib1.bibx26" id="paren.46"/>. The bias pattern of air–sea <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
flux is dominated by the bias of <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx31" id="paren.47"/> (Fig. <xref ref-type="fig" rid="Ch1.F2"/>b and e).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e1578">The same as Fig. <xref ref-type="fig" rid="Ch1.F2"/> but for the anomaly correlation coefficient (ACC). Gray stippling shows where the ACC is lower than the 95th-percentile ACC threshold from random target block resampling, i.e., the reconstruction is not significantly better than a resampling internal variability threshold.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f03.png"/>

        </fig>

      <p id="d1e1589">The variations in the oceanic carbon cycle, described by the correlation coefficient, are better reconstructed than the resampling threshold. Indirect
reconstruction of oceanic and atmospheric dynamics greatly improves tracking performance over atmosphere-only <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">indirect</mml:mi><mml:mi mathvariant="normal">ATMonly</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
reconstruction. The additional reconstruction of the physical ocean (Fig. <xref ref-type="fig" rid="Ch1.F1"/>e and f) largely enables a
correlation above 0.7 (Fig. <xref ref-type="fig" rid="Ch1.F3"/>b and e). Only the carbon cycle in the tropical oceans remains difficult to reconstruct due
to the strong biases in atmospheric circulation (Fig. <xref ref-type="fig" rid="Ch1.F1"/>a–c). Note that the land and atmospheric carbon bias
due to indirect reconstruction are discussed in Fig. <xref ref-type="fig" rid="Ch1.F2"/>g–o in Sects. <xref ref-type="sec" rid="Ch1.S3.SS3"/> and <xref ref-type="sec" rid="Ch1.S3.SS4"/>).</p>
      <p id="d1e1616">Next, we compare the previously shown indirect carbon cycle reconstruction with direct carbon cycle reconstruction by nudging dissolved inorganic
carbon (DIC) and alkalinity (ALK) towards the target.</p>
      <?pagebreak page1146?><p id="d1e1619">While direct oceanic carbon cycle reconstruction reduces the magnitudes of the bias across the ocean, biases are still evident
(Fig. <xref ref-type="fig" rid="Ch1.F2"/>c and f). These biases are caused by the physical biases, which the dynamical oceanic carbon cycle model is sensitive
to. Hence, the biased ocean physics inhibits additional improvements in tracking performance from direct ocean carbon reconstruction.</p>
      <p id="d1e1624">Direct oceanic carbon cycle reconstruction improves the already high correlations across the oceans (Fig. <xref ref-type="fig" rid="Ch1.F3"/>c and f). The
resampling threshold is surpassed nearly everywhere. Only coastal areas, especially those in the eastern tropical Atlantic with strong wind and
precipitation biases, have a correlation below 0.7.</p>
      <p id="d1e1629">Section <xref ref-type="sec" rid="Ch1.S3.SS2"/> shows how well indirect and direct reconstruction of the ocean carbon cycle work overall. While the direct
reconstruction has slightly larger biases in air–sea <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux, direct reconstruction also brings higher correlation. Note that the land and
atmospheric carbon biases due to direct reconstruction are discussed in Fig. <xref ref-type="fig" rid="Ch1.F2"/>g–o in Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>
and <xref ref-type="sec" rid="Ch1.S3.SS4"/>).</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Reconstruction of the land carbon cycle</title>
      <p id="d1e1659">How do these regional physical biases affect the reconstruction of the land carbon cycle? In order to assess the tracking performance in the best
indirect reconstruction of the land carbon cycle, we focus on the state variable cVeg, which represents carbon storage in vegetation (leaves, stems,
roots) and drives air–land <inline-formula><mml:math id="M78" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux and hence the land carbon sink.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e1675">Evolution in global annual mean of <bold>(a)</bold> surface ocean <inline-formula><mml:math id="M79" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <bold>(b)</bold>, air–sea surface <inline-formula><mml:math id="M80" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux (negative values indicate carbon uptake by the ocean) <bold>(c)</bold>, vegetation carbon pools <bold>(g–i)</bold>, air–land surface <inline-formula><mml:math id="M81" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux (negative values indicate carbon uptake by land) <bold>(d)</bold> and atmospheric <inline-formula><mml:math id="M82" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratio <bold>(e)</bold>. The target (gray) is quite well tracked by the indirect (green) and direct (orange) carbon cycle reconstruction. The solid line shows the different reconstruction simulations, the dashed lines show the initialized ensembles started from the different reconstructions.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f04.png"/>

        </fig>

      <?pagebreak page1147?><p id="d1e1749">For the land carbon cycle, the reconstruction of the ocean temperature and salinity did not matter, when atmospheric temperature was also
reconstructed (Figs. <xref ref-type="fig" rid="Ch1.F2"/> and <xref ref-type="fig" rid="Ch1.F3"/>). Indirect reconstruction leads to biases compared to the target in
carbon storage, and in particular cVeg (Fig. <xref ref-type="fig" rid="Ch1.F2"/>g and h), as the land carbon cycle is very sensitive to changes in atmospheric
circulation, which are strongest in the tropics due to the ITCZ shift. In the Amazon and southern Africa, the air–land <inline-formula><mml:math id="M83" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> bias increases,
most likely caused by the strong positive precipitation bias in these regions (Figs. <xref ref-type="fig" rid="Ch1.F1"/>c
and <xref ref-type="fig" rid="Ch1.F2"/>j and k). Conversely, the carbon sink in Southeast Asia and central Africa has a carbon release bias due to less
precipitation and a warm bias (Fig. <xref ref-type="fig" rid="Ch1.F2"/>j and k).</p>
      <p id="d1e1777">The reconstruction correlations in the land carbon cycle are much lower than for the oceanic carbon cycle. cVeg is well reconstructed in the
extratropics, but the biases in the tropics result in correlations with the target lower than the resampling threshold
(Fig. <xref ref-type="fig" rid="Ch1.F3"/>g and h). Air–land <inline-formula><mml:math id="M84" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> shows the same patterns with lower correlations, which are below the resampling
threshold in the tropics (Fig. <xref ref-type="fig" rid="Ch1.F3"/>j and k).</p>
      <p id="d1e1795">Direct reconstruction of the land carbon cycle, which is here performed by resetting all restart files of the land carbon sub-model to the target
every 1 January, greatly enhances tracking performance of cVeg by simulation design. A sensitivity analysis for less frequent resetting can be found
in the supplementary information (Sect. <xref ref-type="sec" rid="App1.Ch1.S4"/>).</p>
      <p id="d1e1800">This direct resetting reconstructs cVeg much better than the resampling threshold in the extratropics. However, the physical climate biases during
the course of a year even introduce cVeg biases stronger than the resampling threshold in the tropics (Fig. <xref ref-type="fig" rid="Ch1.F2"/>i). In addition, the
biases in the air–land <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux are not improved (Fig. <xref ref-type="fig" rid="Ch1.F2"/>l), which indicates that this hard reset of restart files
introduces a shock to the dynamical land model.</p>
      <p id="d1e1818">On the other hand, correlations in cVeg and air–land <inline-formula><mml:math id="M86" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux increased to above 0.5 everywhere except in the tropics, where the ITCZ shift
changes the climate regime (Fig. <xref ref-type="fig" rid="Ch1.F3"/>i and l).</p>
      <p id="d1e1834">Section <xref ref-type="sec" rid="Ch1.S3.SS3"/> shows the direct land carbon cycle reconstruction yields stronger correlation improvements than ocean direct carbon cycle
reconstruction because the indirect reconstruction of the ocean was already quite good. Direct reconstruction reduces biases in land carbon cycle
state variables, but the resulting air–land <inline-formula><mml:math id="M87" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux biases becomes worse.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e1853">The 10-year running mean annual reconstruction skill in bias (<bold>a</bold>, <bold>d</bold>, <bold>g</bold>, <bold>j</bold>, and <bold>m</bold>), anomaly correlation coefficient (ACC, <bold>b</bold>, <bold>e</bold>, <bold>h</bold>, <bold>k</bold> and <bold>n</bold>) and root-mean-square error (RMSE, <bold>c</bold>, <bold>f</bold>, <bold>i</bold>, <bold>l</bold>, and <bold>o</bold>) for global aggregation of carbon cycle variables: <bold>(a–c)</bold> surface oceanic partial pressure of <inline-formula><mml:math id="M88" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <bold>(d–f)</bold> air–sea <inline-formula><mml:math id="M89" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux (negative values indicate carbon uptake by the ocean), <bold>(g–i)</bold> vegetation carbon pools, <bold>(j–l)</bold> air–land <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux (negative values indicate carbon uptake by land) and <bold>(m–o)</bold> mixing ratio of atmospheric <inline-formula><mml:math id="M91" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Error bars show <inline-formula><mml:math id="M92" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M93" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> standard deviation of the running skill over time. Columns show different reconstruction methods: indirect (green) and direct (orange). The gray bar marks the magnitude of the 95th percentile for ACC and 5th percentile for bias and RMSE of a random reconstruction skill block-bootstrapped from the target control simulation as an unskillful reference. Gray stars indicate perfect skill. Thin black error bars with crosses show RMSE skill after a mean bias reduction.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f05.png"/>

        </fig>

</sec>
<?pagebreak page1148?><sec id="Ch1.S3.SS4">
  <label>3.4</label><?xmltex \opttitle{Reconstruction of the global carbon cycle and atmospheric {$\protect\chem{CO_{{2}}}$}}?><title>Reconstruction of the global carbon cycle and atmospheric <inline-formula><mml:math id="M94" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></title>
      <p id="d1e2003">Tracking performance for prognostic atmospheric <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> integrates the air–sea and air–land <inline-formula><mml:math id="M96" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fluxes over time
<xref ref-type="bibr" rid="bib1.bibx52 bib1.bibx53" id="paren.48"/>. As atmospheric <inline-formula><mml:math id="M97" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixes quickly across the globe, we first examine globally aggregated quantities driving
globally averaged atmospheric <inline-formula><mml:math id="M98" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F4"/>).</p>
      <p id="d1e2056">We first examine the indirect reconstruction represented by the green error bars in Figs. <xref ref-type="fig" rid="Ch1.F5"/>
and <xref ref-type="fig" rid="App1.Ch1.S3.F10"/>. The indirect reconstruction has a negative bias in global <inline-formula><mml:math id="M99" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the annual mean
(Figs. <xref ref-type="fig" rid="Ch1.F4"/>a and <xref ref-type="fig" rid="Ch1.F5"/>a). This bias is slightly higher than the magnitude of the resampling
mean absolute error threshold, which resembles the temporal standard deviation (Fig. <xref ref-type="fig" rid="Ch1.F5"/>a). The global
oceanic <inline-formula><mml:math id="M100" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux is biased low but within the resampling threshold magnitude range (Figs. <xref ref-type="fig" rid="Ch1.F4"/>b
and <xref ref-type="fig" rid="Ch1.F5"/>d).</p>
      <p id="d1e2098">On the other hand, the variations of the global oceanic carbon cycle measured by ACC are well reconstructed, surpassing the resampling threshold
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>b and e).</p>
      <p id="d1e2104">When biases are persistent, they can be reduced by a bias reduction procedure, which is often done when applying<?pagebreak page1149?> climate model output to a real-world
application. After applying a simple mean bias reduction, RMSE is well below the resampling threshold
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>c and f).</p>
      <p id="d1e2109">The indirect reconstruction also leads to biases in the land carbon cycle (Fig. <xref ref-type="fig" rid="Ch1.F4"/>c and d). Vegetation carbon pools (cVeg) have a
strong positive bias that is much larger than the resampling threshold (Fig. <xref ref-type="fig" rid="Ch1.F4"/>c). The bias of global air–land <inline-formula><mml:math id="M101" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux is very
small in the annual mean.</p>
      <p id="d1e2127">Global annual cVeg has a 0.5 correlation with the target, which is lower than the resampling threshold. Global air–land <inline-formula><mml:math id="M102" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> variations are
well reconstructed, surpassing the resampling threshold (Fig. <xref ref-type="fig" rid="Ch1.F5"/>h and k).</p>
      <p id="d1e2143">Without bias reduction, accuracy measured by RMSE is worse than the resampling cVeg threshold. After bias reduction, cVeg accuracy is still slightly
worse than the threshold, but accuracy improves from 5 <inline-formula><mml:math id="M103" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Pg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> to below 1 <inline-formula><mml:math id="M104" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Pg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>, which is the magnitude of the resampling threshold
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>i).  Global air–land <inline-formula><mml:math id="M105" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux accuracy is
below the resampling threshold (Fig. <xref ref-type="fig" rid="App1.Ch1.S3.F10"/>l).</p>
      <p id="d1e2183">Global atmospheric <inline-formula><mml:math id="M106" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> has larger variations in reconstruction skill depending on which 10-year chunk is used to calculate the metric. And
the skill has a nearly constant level throughout the year (Fig. <xref ref-type="fig" rid="App1.Ch1.S3.F10"/>m–o). The mean bias is close to zero
(Figs. <xref ref-type="fig" rid="Ch1.F4"/>e and <xref ref-type="fig" rid="Ch1.F5"/>m). Correlation with the target is above 0.7 and in the range of the
resampling threshold (Fig. <xref ref-type="fig" rid="App1.Ch1.S3.F10"/>n). accuracy is at 0.7 <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula> in the range of the resampling threshold. Mean
bias reduction improves accuracy to below 0.5 <inline-formula><mml:math id="M108" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F5"/>o).</p>
      <p id="d1e2224">Understanding the tracking performance of the ocean and land carbon cycle, we can now evaluate the spatial distribution of globally averaged
atmospheric <inline-formula><mml:math id="M109" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Reconstructing only the atmosphere warmed the globe and also increased atmospheric <inline-formula><mml:math id="M110" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> globally
(Figs. <xref ref-type="fig" rid="Ch1.F1"/>k and <xref ref-type="fig" rid="Ch1.F2"/>m). Additionally reconstructing the ocean keeps the temperature
stable but introduces a less than 1 <inline-formula><mml:math id="M111" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula> low bias across the Southern Hemisphere, reflecting the higher uptake of the Southern Ocean carbon
sink and the Southern Hemisphere land carbon sink (Fig. <xref ref-type="fig" rid="Ch1.F2"/>e, k, and n). The variations in atmospheric <inline-formula><mml:math id="M112" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are well
reconstructed with correlation coefficients above 0.6 in the Southern Hemisphere, but across the Northern Hemisphere extratropics and land regions with
strong physics biases correlation is at 0.5 below the resampling threshold (Fig. <xref ref-type="fig" rid="Ch1.F2"/>m and n).</p>
      <p id="d1e2278">Now, we assess the potential improvements in the global carbon cycle due to direct reconstruction of the global carbon cycle variables shown in orange
in Figs. <xref ref-type="fig" rid="Ch1.F5"/> and <xref ref-type="fig" rid="App1.Ch1.S3.F10"/>.</p>
      <p id="d1e2285">The global ocean carbon cycle improves after direct DIC and alkalinity reconstruction (Fig. <xref ref-type="fig" rid="Ch1.F5"/>a). Monthly
biases remain but are now within the resampling threshold (Fig. <xref ref-type="fig" rid="App1.Ch1.S3.F10"/>a). Correlation improves from 0.8 to above 0.9
in surface <inline-formula><mml:math id="M113" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Air–sea <inline-formula><mml:math id="M114" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> correlation does not improve but only because correlations above 0.9 for the indirect
reconstruction were already very high (Fig. <xref ref-type="fig" rid="Ch1.F5"/>b). Correlation for boreal winter is above 0.95, indicating
that initial conditions in winter are well reconstructible for initializing forecasts of oceanic carbon sink (Fig. <xref ref-type="fig" rid="App1.Ch1.S3.F10"/>b). Direct reconstruction improves <inline-formula><mml:math id="M115" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> accuracy to 0.2 <inline-formula><mml:math id="M116" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula>. Mean bias
reduction can hardly improve accuracy after direct reconstruction (Fig. <xref ref-type="fig" rid="Ch1.F5"/>c). Air–sea <inline-formula><mml:math id="M117" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux
accuracy degrades in comparison to indirect reconstruction. This degradation is removed by the mean bias reduction
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>f).</p>
      <p id="d1e2357">All results for the direct reconstruction of the land carbon cycle must be understood in the context of the method chosen for the direct
reconstruction. Because we reset the restart files in 1 January to the target, the metrics are near perfect in January by design. However, then the
biogeochemistry is not modified directly for 12 months and only follows the physical climate reconstruction indirectly, and thus biases triggered by
physical biases unaligned with the reset land biogeochemistry pools quickly build up and may approach the metric of the indirect
reconstruction. Likewise, there is no bias in global cVeg in January by design. The bias increases with the physical biases until it surpasses the
resampling threshold in August and continues increasing until the end of the year (Fig. <xref ref-type="fig" rid="App1.Ch1.S3.F10"/>g). Annual cVeg bias is strongly
improved by direct reconstruction (Fig. <xref ref-type="fig" rid="Ch1.F5"/>g). Global air–land <inline-formula><mml:math id="M118" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux has a stronger bias
than the indirect reconstruction (Fig. <xref ref-type="fig" rid="Ch1.F5"/>j). Correlation in the global cVeg is near perfect in January by
design and slowly decreases to 0.8 in December while still being better than the resampling threshold
(Fig. <xref ref-type="fig" rid="App1.Ch1.S3.F10"/>h). Annual cVeg variations are reconstructed much better by the direct method compared to the indirect method
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>h). Global air–land <inline-formula><mml:math id="M119" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux variations increase by 0.2
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>k). Direct reconstruction improves global cVeg accuracy. Accuracy is better than the resampling
threshold after mean bias reduction. Direct reconstruction slightly improves <inline-formula><mml:math id="M120" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux accuracy. Furthermore, a mean bias reduction slightly
improves accuracy (Fig. <xref ref-type="fig" rid="Ch1.F5"/>i and l).</p>
      <p id="d1e2408">The global <inline-formula><mml:math id="M121" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> bias in the direct reconstruction increases to <inline-formula><mml:math id="M122" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>1.8 <inline-formula><mml:math id="M123" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F5"/>m),
but correlation increases from 0.7 to 0.9 (Fig. <xref ref-type="fig" rid="App1.Ch1.S3.F10"/>n).  The direct reconstruction has worse accuracy than the
indirect due to established bias, but after mean bias reduction the accuracy is below 0.3 <inline-formula><mml:math id="M124" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula>
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>o).</p>
      <p id="d1e2452">How does direct carbon cycle reconstruction affect tracking performance in prognostic atmospheric <inline-formula><mml:math id="M125" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>? The time series already indicate
that there is a 1–2 <inline-formula><mml:math id="M126" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula> atmospheric <inline-formula><mml:math id="M127" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> positive bias in the direct reconstruction (Fig. <xref ref-type="fig" rid="Ch1.F4"/>e). This bias is very
homogeneous over the oceans (Fig. <xref ref-type="fig" rid="Ch1.F2"/>o). However, correlation strongly increased to 0.9 above the oceans and above 0.7 on land,
except for central Africa with its persistent biases, where the reconstruction is not better than the resampling threshold.</p>
      <p id="d1e2489">Section <xref ref-type="sec" rid="Ch1.S3.SS4"/> shows that atmospheric <inline-formula><mml:math id="M128" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> follows the reconstructed land and ocean carbon cycle, integrating their respective
fluxes over time. The direct carbon cycle reconstruction introduces a large bias in the atmospheric <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> distribution that the indirect
reconstruction did not suffer from even after mean bias reduction (Fig. <xref ref-type="fig" rid="App1.Ch1.S2.F9"/>). Globally averaged atmospheric
<inline-formula><mml:math id="M130" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> after direct reconstruction had a better accuracy tracking performance after the mean bias reduction, showing<?pagebreak page1150?> how global aggregation can
balance regional biases. The direct land and ocean carbon cycle reconstructions track targets much better than the indirect reconstruction when
measured by correlation.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e2532">Predictive skill measured by <bold>(a–e)</bold> root-mean-square error (RMSE), <bold>(f–j)</bold> RMSE after bias reduction, and <bold>(k–o)</bold> anomaly correlation coefficient (ACC) between the initialized ensemble mean and the target as a function of lead year for different initialization setups: perfect indicating no reconstruction and hence perfect initial conditions to predict the target (gray), indirect (green), and direct (orange) reconstructions. Columns show global variables for the ocean carbon cycle, i.e., <bold>(a)</bold> oceanic surface <inline-formula><mml:math id="M131" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <bold>(b)</bold> air–sea <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux; for the land carbon cycle, i.e., <bold>(c)</bold> total land carbon pools and <bold>(d)</bold> air–land <inline-formula><mml:math id="M133" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux; and in the atmosphere, i.e., <bold>(e)</bold> atmospheric <inline-formula><mml:math id="M134" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratio. Initialized ensembles are resampled with replacement (<inline-formula><mml:math id="M135" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M136" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 500) along the initialization dimension to account for initialization sampling uncertainty <xref ref-type="bibr" rid="bib1.bibx52" id="paren.49"><named-content content-type="pre">see</named-content></xref>, where error bars show the resampled initialization skill uncertainty (<inline-formula><mml:math id="M137" display="inline"><mml:mo lspace="0mm">±</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M138" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula>). Uninitialized ensembles, shown at lead 0, are resampled from the target control simulation and show the reference skill without initialization.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f06.png"/>

        </fig>

      <p id="d1e2646">Generally speaking, this first part showed how direct carbon cycle reconstruction improves linear association between reconstruction and target (measured
by ACC) but often increases biases degrading accuracy (measured by RMSE). Only after bias reduction does accuracy improve with respect to the indirect
carbon cycle reconstruction.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><?xmltex \opttitle{Impact of reconstruction on predictive skill}?><title>Impact of reconstruction on global carbon cycle predictive skill</title>
      <p id="d1e2661">The second part of the paper assesses how predictive skill improves due to direct initialization of global carbon cycle variables. Specifically, we
verify the RMSE between the five ensemble members initialized from the indirect and direct reconstructions across all initializations based on raw and
lead-time-dependent bias-corrected time series (Figs. <xref ref-type="fig" rid="Ch1.F4"/> and <xref ref-type="fig" rid="Ch1.F6"/>).</p>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>Oceanic carbon cycle</title>
      <p id="d1e2675">The RMSE between the initialized ensembles and the target simulations in annual globally averaged <inline-formula><mml:math id="M139" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> continuously increases from
lead year 1 to lead year 3 as expected. While perfectly and indirectly initialized ensembles stay below the resampling uninitialized threshold
for the first 2 lead years, indicating that global <inline-formula><mml:math id="M140" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is predictable due to initialization
(Fig. <xref ref-type="fig" rid="Ch1.F6"/>a), the direct initialization has a larger error due to the offsets in global atmospheric
<inline-formula><mml:math id="M141" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, which <inline-formula><mml:math id="M142" display="inline"><mml:mrow class="chem"><mml:mtext mathvariant="italic">p</mml:mtext><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> tries to equilibrate to (Fig. <xref ref-type="fig" rid="Ch1.F4"/>e). Therefore, this persistent bias causes lead year
3 to be not predictable. A simple mean bias reduction resolves this issue, making all 3 lead years predictable. Direct initialization only
beats indirect initialization for lead year 1 with RMSE of 0.35 <inline-formula><mml:math id="M143" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.05 versus 0.45 <inline-formula><mml:math id="M144" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.05 <inline-formula><mml:math id="M145" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula>
(Fig. <xref ref-type="fig" rid="Ch1.F6"/>f).</p>
      <p id="d1e2757">Global air–sea <inline-formula><mml:math id="M146" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux is predictable for 3 years in all initialization methods, which is 1 year longer than in <xref ref-type="bibr" rid="bib1.bibx52" id="text.50"/>,
possibly because here we use more and more equally distributed initialization dates. Direct initialization is advantageous over the indirect
initialization because the initial lead offset is smaller (0.14 <inline-formula><mml:math id="M147" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.01 versus 0.18 <inline-formula><mml:math id="M148" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.02 <inline-formula><mml:math id="M149" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Pg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)
(Fig. <xref ref-type="fig" rid="Ch1.F6"/>b). The simple mean bias reduction improves the skill of the non-perfect initializations to identical
magnitudes (Fig. <xref ref-type="fig" rid="Ch1.F6"/>g).</p>
</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>Land carbon cycle</title>
      <p id="d1e2821">Indirect initialization makes cVeg not predictable. The physical reconstruction biases drive larger errors in lead year 1 than in later lead years and
also to a lesser extent for the direct reconstruction, where some biases are corrected. But both reconstructed initialized ensembles show decreasing
distances towards the target, whereas increasing distances are expected for vanishing predictive skill as in the perfectly initialized ensembles
(Fig. <xref ref-type="fig" rid="Ch1.F6"/>c). Mean bias reduction eliminates the differences between direct and perfect reconstruction, making
both predictable unlike the indirect reconstruction (Fig. <xref ref-type="fig" rid="Ch1.F6"/>h).</p>
      <p id="d1e2828">Global air–land <inline-formula><mml:math id="M150" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux is predictable for 3 years, again 1 year longer than found in <xref ref-type="bibr" rid="bib1.bibx52" id="text.51"/>. Both reconstructed
initializations start with a higher error of 1.1 <inline-formula><mml:math id="M151" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.2 <inline-formula><mml:math id="M152" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Pg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> in lead year 1 compared to perfectly initialized
0.7 <inline-formula><mml:math id="M153" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1 <inline-formula><mml:math id="M154" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Pg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F6"/>d). Mean bias reduction brings non-perfect initializations
within the error bars of the perfect initialization after lead year 1 (Fig. <xref ref-type="fig" rid="Ch1.F6"/>i). A recent analysis
focused on process-based understanding of land carbon predictability using JSBACH indicates that soil moisture and soil carbon storage, both
reconstructed by the direct method, influence the air–land <inline-formula><mml:math id="M155" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux the most <xref ref-type="bibr" rid="bib1.bibx5" id="paren.52"/>.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><?xmltex \opttitle{Atmospheric {$\protect\chem{CO_{{2}}}$}}?><title>Atmospheric <inline-formula><mml:math id="M156" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></title>
      <p id="d1e2938">Perfect and indirect initialization atmospheric <inline-formula><mml:math id="M157" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> predict the target for 3 years, as found in <xref ref-type="bibr" rid="bib1.bibx52" id="text.53"/>. While the perfect
initialization error grows continuously from zero, the indirect initialization error stays nearly constant at 0.7 <inline-formula><mml:math id="M158" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1 <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula>, but the
error stays below the direct initialization error, which suffers from the bias in the direct reconstruction simulation
(Fig. <xref ref-type="fig" rid="Ch1.F6"/>e). Mean bias reduction improves RMSE, making direct initialization better but still within the
margins of the indirect initialization. After lead year 1, indirect and direct initializations are similar to perfect-initialization predictive
skill at 0.7 <inline-formula><mml:math id="M160" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F6"/>j).</p>
      <p id="d1e2983">The anomaly correlation coefficient measures how predictable variations are and is independent of the mean bias
(Fig. <xref ref-type="fig" rid="Ch1.F6"/>k–o) <xref ref-type="bibr" rid="bib1.bibx20" id="paren.54"/>. Measuring predictive skill with ACC shows very similar behavior across
all variables. While perfect initialization is the most predictable, indirect and direct carbon cycle initialization are fairly similar. Predictive ACC
skill seems to saturate after lead year 2.</p>
      <p id="d1e2991">These initialized predictive skill results show that indirectly initialized ensembles predict the target quite reasonably. Direct initialization
suffers strong shocks in some variables, when reconstruction is started and stopped, but these shocks can be partly reduced by a mean bias
reduction. The improvements of direct reconstruction over indirect reconstruction in the global carbon cycle predictive skill after bias reduction are
not significant, except for vegetation carbon pools (cVeg) (Fig. <xref ref-type="fig" rid="Ch1.F6"/>f–j).</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Summary and conclusions</title>
      <p id="d1e3006">In this study, we assess how well the global carbon cycle is reconstructed in an ESM and how well a ground truth target simulation can be predicted by
these initializations.</p>
      <p id="d1e3009">The main limitation of land carbon cycle reconstruction potential is the hard reset of restart files which is fundamentally different to the dynamical
nudging applied for ocean and atmospheric physics. Our study represents a first attempt<?pagebreak page1151?> to quantify whether reconstruction of initial conditions in the land
carbon cycle is indeed needed for addressing predictive skill of the global carbon sinks and atmospheric <inline-formula><mml:math id="M161" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration. For a real-world
application, our direct land carbon reconstruction method should not be used. In practice, satellite products of carbon cycle variables could be
assimilated into the model periodically or at each time step. However, strong interference with the model alone will likely result in strong drifts,
especially in dependent variables. For useful real-world applications of land carbon cycle assimilation, sequential
<xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx1 bib1.bibx58" id="paren.55"/> or variational <xref ref-type="bibr" rid="bib1.bibx14" id="paren.56"/> data assimilation techniques could be used for initialization. However,
the problem of data availability for the reforecast period still remains. <xref ref-type="bibr" rid="bib1.bibx15" id="text.57"/> reconstruction is the simplest approach to data assimilation, allowing little
flexibility in the model. Many centers are now transitioning towards ensemble Kalman filter data assimilation, which allows more variability
<xref ref-type="bibr" rid="bib1.bibx40 bib1.bibx4" id="paren.58"/>. Applying such techniques to the carbon cycle may lead to better reconstructions. A final limitation of the method is that
we use a model to reconstruct itself. Therefore, we do not have any structural uncertainty other than the reconstruction method itself or
processes missing in our framework. When reconstructing the real world, our model lacks processes and resolution contributing to structural
uncertainty.</p>
      <p id="d1e3035">We find that reconstruction, which is an interference with the freely evolving model, leads to biases in physical climate. Because of its sensitivity
to physical climate, the global carbon cycle is itself heavily biased by these physical biases. In ESMs, first the atmosphere then the ocean and only
then the carbon cycle is equilibrated and tuned for preindustrial control conditions. Once reconstruction slightly modifies the mean state in the
physical climate, the sensitive carbon cycle deviates from the near-equilibrium state. A previous study reported biases after reconstruction
<xref ref-type="bibr" rid="bib1.bibx59" id="paren.59"/>.<?pagebreak page1152?> However, to our knowledge, we present the first attempt at reconstructing  it in a perfect-model framework, where no biases due to
climatology differences are expectable. <xref ref-type="bibr" rid="bib1.bibx59" id="text.60"/> also mention that reconstruction ability likely depends on the model and application area, and
hence there seems to be no out-of-the-box solution for all ESMs. However, additionally nudging sea surface height might improve the ENSO thermocline
feedback <xref ref-type="bibr" rid="bib1.bibx32" id="paren.61"/>.</p>
      <p id="d1e3047">We furthermore find that the commonly used indirect reconstruction of carbon cycle, in which only climate physics are reconstructed and the carbon
cycle follows indirectly, tracks the target reasonably well. A resampling threshold corresponding to internal variability is surpassed across large
parts of the globe. Only the areas with strong physical biases and consequently carbon cycle biases miss that benchmark occasionally. For the ocean carbon
cycle, the reconstruction of the physical ocean fields is critical to reconstruct carbon cycle initial conditions, which explains why current
state-of-the-art carbon cycle prediction systems have skill despite not initializing the ocean carbon cycle with ocean carbon cycle observations
<xref ref-type="bibr" rid="bib1.bibx48 bib1.bibx39 bib1.bibx28 bib1.bibx31" id="paren.62"/>.</p>
      <p id="d1e3054">Direct reconstruction of ocean and land carbon cycle improves bias, association and accuracy on a grid cell level; however, when aggregated on the global scale,
direct reconstruction does not significantly improve over the indirect reconstruction. In addition,  after a mean bias reduction, which is a common
post-processing technique applied to model output for real-word use, accuracy measured in RMSE after direct reconstruction is only slightly better,
often still overlapping with indirect reconstruction. Because the advantage of direct reconstruction can similarly be achieved by a simple mean bias
reduction, we label these direct reconstruction improvements as trivial with respect to the indirect method on the global scale. More advanced
data assimilation methods may yield better reconstruction skill for the carbon cycle <xref ref-type="bibr" rid="bib1.bibx14 bib1.bibx1 bib1.bibx58" id="paren.63"/>.</p>
      <p id="d1e3060">When the success of atmospheric <inline-formula><mml:math id="M162" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> reconstruction is evaluated, caution is needed. Reconstruction of the ocean and land carbon sink can
easily introduce offsets from the target because reconstruction violates conservation of mass by creating or erasing carbon. This can easily lead to
offsets in the sinks that quickly accumulate in atmospheric <inline-formula><mml:math id="M163" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. If <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> reconstruction is the focus, i.e., in reconstructing the
transient climate from <inline-formula><mml:math id="M165" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission, and offsets appear, adjustments of atmospheric <inline-formula><mml:math id="M166" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> might be needed to correct for these
offsets. However, we find that these offset biases are only of the order of 1–2 <inline-formula><mml:math id="M167" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula> in a perfect-model framework, which is small compared to
the range of carbon feedbacks seen in atmospheric <inline-formula><mml:math id="M168" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in transient simulations. Hence, these offsets due to the restart files are not in our
focus. Instead, equilibrated land and ocean carbon sinks with reconstructed climate determine realistic reconstructed atmospheric <inline-formula><mml:math id="M169" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e3149">In the second part, we find that predictive skill after indirect initialization is similar in quality to after direct initialization. This means that
oceanic carbon cycle initial conditions are much less important than physical ocean initial conditions for oceanic carbon cycle predictions, which
confirms the findings of <xref ref-type="bibr" rid="bib1.bibx9" id="paren.64"/>. Reconstructed initialized predictive skill is close to perfectly initialized predictive skill after
mean bias reduction, especially after lead year one.</p>
      <p id="d1e3155">Because the improved global predictive skill after direct reconstruction can similarly be achieved by a simple mean bias reduction and predictive
skill after both reconstructions mostly overlaps, we label these direct reconstruction predictive skill improvements trivial with respect to
the indirect method on the global scale. This result is similar to <xref ref-type="bibr" rid="bib1.bibx9" id="text.65"/>, who find that ocean carbon cycle initial conditions matter
much less than physical ocean initial conditions for annual carbon cycle predictions.</p>
      <p id="d1e3161">We conclude that the indirect carbon cycle reconstruction serves its purpose of reconstructing variation in the global carbon cycle. However, our
study is designed and conducted in an idealized framework. When transferring our results into assimilation of real-world observations and its
implications on predictability, structural uncertainties (model resolution in space and time) and missing ecosystem processes additionally need to be
dealt with. Future studies, especially those aiming to address regional marine ecosystems, could consider a wider range of assimilation techniques and
data breadth. Furthermore, more advanced data assimilation techniques <xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx14 bib1.bibx1 bib1.bibx58" id="paren.66"/> should be explored. Reducing
the physical climate bias with its consequences for the carbon cycle holds more potential for improvements in initial conditions and predictive skill
than direct carbon cycle initialization <xref ref-type="bibr" rid="bib1.bibx45 bib1.bibx25 bib1.bibx16" id="paren.67"/>.</p>
      <p id="d1e3170">Nevertheless, our results add confidence to the current practice of indirect reconstruction in carbon cycle prediction systems <xref ref-type="bibr" rid="bib1.bibx18" id="paren.68"/>.</p>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <?xmltex \currentcnt{A}?><label>Appendix A</label><title>Metrics</title>
<sec id="App1.Ch1.S1.SS1">
  <label>A1</label><title>ACC</title>
      <p id="d1e3194">The anomaly correlation coefficient (ACC) assesses the synchronous evolution over time of the forecast, here reconstruction <inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and the reference,
here target <inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <xref ref-type="bibr" rid="bib1.bibx20" id="paren.69"/> and is defined as follows:
            <disp-formula id="App1.Ch1.S1.E2" content-type="numbered"><label>A1</label><mml:math id="M172" display="block"><mml:mtable class="split" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mtext>ACC</mml:mtext><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mtext>cov</mml:mtext><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow><mml:msqrt><mml:mrow><mml:mtext>var</mml:mtext><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>⋅</mml:mo><mml:mtext>var</mml:mtext><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:msqrt></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mi>T</mml:mi></mml:mfrac></mml:mstyle><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>T</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mrow><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mrow><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msqrt><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>T</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mrow><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mi>T</mml:mi></mml:mfrac></mml:mstyle></mml:msqrt><mml:mo>⋅</mml:mo><mml:msqrt><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>T</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mrow><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mi>T</mml:mi></mml:mfrac></mml:mstyle></mml:msqrt></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula></p>
</sec>
<?pagebreak page1153?><sec id="App1.Ch1.S1.SS2">
  <label>A2</label><title>RMSE</title>
      <p id="d1e3537">In the initial conditions reconstruction component, the root-mean-square error (RMSE) measures the second-order distance between forecast <inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, here
reconstruction <inline-formula><mml:math id="M174" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and the reference, here target <inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <xref ref-type="bibr" rid="bib1.bibx20" id="paren.70"/> and is defined as follows:
            <disp-formula id="App1.Ch1.S1.E3" content-type="numbered"><label>A2</label><mml:math id="M176" display="block"><mml:mrow><mml:mtext>RMSE</mml:mtext><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msqrt><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>T</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>T</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mi>T</mml:mi></mml:mfrac></mml:mstyle></mml:msqrt><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e3672">As a predictability metric, the RMSE measures the second-order distance between forecast <inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and the target <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
over lead time <inline-formula><mml:math id="M179" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx20" id="paren.71"/>. RMSE is calculated over all initializations <inline-formula><mml:math id="M180" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula>, and every member <inline-formula><mml:math id="M181" display="inline"><mml:mi>M</mml:mi></mml:math></inline-formula> is used as a forecast and verified
against the target. RMSE is defined as follows:
            <disp-formula id="App1.Ch1.S1.E4" content-type="numbered"><label>A3</label><mml:math id="M182" display="block"><mml:mrow><mml:mtext>RMSE</mml:mtext><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msqrt><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mrow><mml:mi>N</mml:mi><mml:mo>,</mml:mo><mml:mi>M</mml:mi></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mi>j</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:mi>N</mml:mi><mml:mi>M</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:msqrt><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
</sec>
<sec id="App1.Ch1.S1.SS3">
  <label>A3</label><title>Bias</title>
      <p id="d1e3846">We set the target as the ground truth. Therefore, any deviation from the reconstructions <inline-formula><mml:math id="M183" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to the target <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is seen as a bias, analogous
to the bias between a model simulation (reconstruction) and observations (ground truth).
            <disp-formula id="App1.Ch1.S1.E5" content-type="numbered"><label>A4</label><mml:math id="M185" display="block"><mml:mrow><mml:mtext>bias(t</mml:mtext><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></disp-formula></p>
</sec>
<sec id="App1.Ch1.S1.SS4">
  <label>A4</label><title>Removing the bias</title>
      <p id="d1e3921">After removing the mean bias from reconstruction <inline-formula><mml:math id="M186" display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> and target <inline-formula><mml:math id="M187" display="inline"><mml:mover accent="true"><mml:mrow><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>, the RMSE is also calculated as debiased RMSE.
            <disp-formula id="App1.Ch1.S1.E6" content-type="numbered"><label>A5</label><mml:math id="M188" display="block"><mml:mrow><mml:msub><mml:mtext>RMSE</mml:mtext><mml:mtext>debiased</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mtext>RMSE</mml:mtext><mml:mfenced close=")" open="("><mml:mrow><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mrow><mml:mi>x</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>,</mml:mo><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mrow><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow></mml:mfenced></mml:mrow></mml:math></disp-formula></p><?xmltex \hack{\newpage}?>
</sec>
<sec id="App1.Ch1.S1.SS5">
  <label>A5</label><title>Running metric</title>
      <p id="d1e4048">We calculate the mean tracking performance (mtp) over time for all metrics as a running mean over <inline-formula><mml:math id="M189" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M190" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 10 years. This reflects that
reconstructions are supposed to reconstruct the given climate states for periods from months to a couple of years, and the metric should not be prone to
long-term trends that are not captured by the reconstruction. We ignore the first <inline-formula><mml:math id="M191" display="inline"><mml:mi>c</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M192" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 10 years (out of <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mo>max⁡</mml:mo></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M194" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 48 years) of
reconstruction, where the model experiences an initial shock after adjusting to the new reconstructed climate <xref ref-type="bibr" rid="bib1.bibx24" id="paren.72"/>.
            <disp-formula id="App1.Ch1.S1.E7" content-type="numbered"><label>A6</label><mml:math id="M195" display="block"><mml:mtable class="split" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mtext>tpm</mml:mtext><mml:mo>(</mml:mo><mml:mtext>metric</mml:mtext><mml:mo>)</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mo>max⁡</mml:mo></mml:msub><mml:mo>-</mml:mo><mml:mi>s</mml:mi><mml:mo>-</mml:mo><mml:mi>c</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mi>c</mml:mi></mml:mrow><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mo>max⁡</mml:mo></mml:msub><mml:mo>-</mml:mo><mml:mi>s</mml:mi></mml:mrow></mml:munderover><mml:mtext>metric</mml:mtext><mml:mo>(</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mi>t</mml:mi><mml:mo>.</mml:mo><mml:mo>.</mml:mo><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi>s</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mi>t</mml:mi><mml:mo>.</mml:mo><mml:mo>.</mml:mo><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi>s</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula></p>
</sec>
<sec id="App1.Ch1.S1.SS6">
  <label>A6</label><title>Resampling threshold</title>
      <p id="d1e4230">To get an estimate of random tracking performance due to internal variability, i.e., how well one 10-year chunk tracks another random 10-year
chunk, we randomly resample 10-year chunks from the target simulation and apply the same tracking metrics. As a baseline skill from this random
resampling in the figures, we take the 95 % threshold for ACC and the 95 % for the remaining distance-based metrics to ensure that the
tracking performance from a reconstruction simulation is only worse compared to 1 out of 20 randomly resampled 10-year chunks.</p><?xmltex \hack{\clearpage}?>
</sec>
</app>

<?pagebreak page1154?><app id="App1.Ch1.S2">
  <?xmltex \currentcnt{B}?><label>Appendix B</label><title>Reconstruction RMSE maps</title>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S2.F7"><?xmltex \currentcnt{B1}?><?xmltex \def\figurename{Figure}?><label>Figure B1</label><caption><p id="d1e4245">The same as Fig. <xref ref-type="fig" rid="Ch1.F1"/> but for RMSE <bold>(a–f)</bold> and for RMSE after bias reduction <bold>(g–l)</bold>.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f07.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S2.F8" specific-use="star"><?xmltex \currentcnt{B2}?><?xmltex \def\figurename{Figure}?><label>Figure B2</label><caption><p id="d1e4266">The same as Fig. <xref ref-type="fig" rid="Ch1.F2"/> but for the RMSE. Gray stippling shows where the RMSE is worse than the 5th-percentile RMSE threshold from random target block resampling, i.e., the reconstruction is not significantly better than internal variability.</p></caption>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f08.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S2.F9" specific-use="star"><?xmltex \currentcnt{B3}?><?xmltex \def\figurename{Figure}?><label>Figure B3</label><caption><p id="d1e4280">The same as Fig. <xref ref-type="fig" rid="App1.Ch1.S2.F8"/> but for RMSE after bias reduction.</p></caption>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f09.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>

<?pagebreak page1157?><app id="App1.Ch1.S3">
  <?xmltex \currentcnt{C}?><label>Appendix C</label><title>Monthly global tracking performance</title>
      <p id="d1e4301">In order to explain the effect of the direct reconstruction in the land carbon cycle on global reconstruction performance,
Fig. <xref ref-type="fig" rid="App1.Ch1.S3.F10"/> shows the tracking performance for monthly time series, whereas
Fig. <xref ref-type="fig" rid="Ch1.F5"/> show only results for annual time series.</p>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S3.F10"><?xmltex \currentcnt{C1}?><?xmltex \def\figurename{Figure}?><label>Figure C1</label><caption><p id="d1e4310">The 10-year running mean reconstruction skill per month in bias (<bold>a</bold>, <bold>d</bold>, <bold>g</bold>, <bold>j</bold> and <bold>m</bold>), anomaly correlation coefficient (ACC, <bold>b</bold>, <bold>e</bold>, <bold>h</bold>, <bold>k</bold> and <bold>n</bold>) and root-mean-square error (RMSE, <bold>c</bold>, <bold>f</bold>, <bold>i</bold>, <bold>l</bold> and <bold>o</bold>) for global aggregation of carbon cycle variables: <bold>(a–c)</bold> surface oceanic partial pressure of <inline-formula><mml:math id="M196" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <bold>(d–f)</bold> air–sea <inline-formula><mml:math id="M197" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux (negative values indicate carbon uptake by the ocean), <bold>(g–i)</bold> vegetation carbon pools, <bold>(j–l)</bold> air–land <inline-formula><mml:math id="M198" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux (negative values indicate carbon uptake by land) and <bold>(m–o)</bold> mixing ratio of atmospheric <inline-formula><mml:math id="M199" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Whiskers show the 5th and 95th percentile of the running skill over time. Colors show different reconstruction methods: indirect (green) and direct (orange). Gray stars indicate perfect skill. Gray dots mark the 95th percentile for ACC and 5th percentile for the remaining distance-based metrics of random reconstruction skill block-bootstrapped from the target control simulation as an unskilled reference skill. Crosses show reconstruction skill of annual mean time series. Thin lines show monthly RMSE skill after a mean bias reduction.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f10.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>

<?pagebreak page1158?><app id="App1.Ch1.S4">
  <?xmltex \currentcnt{D}?><label>Appendix D</label><title>Sensitivity analysis for different reconstruction time steps</title>
<sec id="App1.Ch1.S4.SS1">
  <label>D1</label><title>Land Carbon Cycle</title>
      <p id="d1e4446">We perform sensitivity reconstructions of the land restart file to understand how sensitive this reconstruction method is to the frequency of
resetting. We performed additional simulations, resetting the land model on 1 January every second or every fifth year (orange triangles in
Fig. <xref ref-type="fig" rid="App1.Ch1.S4.F11"/>).</p>
      <p id="d1e4451">Global cVeg starts by definition with perfect skill in January after a reset. When resetting only every second year, the mean January tracking performance
is already decreased, and decreases further. The negative correlations for 5-year resetting shows the shock to the system if not immediately balanced
by further resetting in the every (second) year case.</p>
      <p id="d1e4454">The global air–land <inline-formula><mml:math id="M200" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux correlation degrades for less frequent resetting towards the indirect performance, but bias and accuracy
improve.</p>
      <p id="d1e4468">Global atmospheric <inline-formula><mml:math id="M201" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> aggregates these results and is also sensitive to biases developing in both sinks. Here, less frequent resetting of
the land carbon cycle reduces the bias and therefore accuracy.</p>
      <p id="d1e4483">The tracking accuracy is of similar magnitude after mean bias reduction.</p>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S4.F11" specific-use="star"><?xmltex \currentcnt{D1}?><?xmltex \def\figurename{Figure}?><label>Figure D1</label><caption><p id="d1e4488">The same as Fig. <xref ref-type="fig" rid="App1.Ch1.S3.F10"/> but for sensitivity simulations of the restart file resetting reconstruction. In all simulations the physical climate is nudged as in indirect simulations (Table <xref ref-type="table" rid="Ch1.T1"/>). DirectLR1ON describes land resetting every year and ocean nudging and is the indirect simulation. DirectLR2ON describes land resetting every second year and ocean nudging. DirectLR5ON describes land resetting every fifth year and ocean nudging. DirectLxOR1 describes no land reconstruction and ocean setting every year.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f11.png"/>

        </fig>

</sec>
<sec id="App1.Ch1.S4.SS2">
  <label>D2</label><title>Ocean carbon cycle</title>
      <p id="d1e4509">We perform the same kind of restart file resetting reconstruction with the ocean model (blue line in
Fig. <xref ref-type="fig" rid="App1.Ch1.S4.F11"/>). The motivation here is to see whether a resetting of the ocean carbon cycle also
yields perfect accuracy (RMSE) skill for January. However, the ocean carbon cycle is sensitive to the physical climate, and hence the direct ocean carbon
cycle resetting accuracy degrades compared to the indirect tracking bias and accuracy, and only correlation increases
(Fig. <xref ref-type="fig" rid="App1.Ch1.S4.F11"/>a–f). Contrary to resetting restart files in the land model, initial conditions
accuracy measured by RMSE does not approach a perfect skill of 0 because the physical climate did not experience this hard reset but is nudged
dynamically.</p>
      <p id="d1e4516">In general, this hard reconstruction also seems to work for the ocean carbon cycle because the tracking performances are not very different from the
indirect method (Fig. <xref ref-type="fig" rid="App1.Ch1.S4.F11"/>a-f).</p>
      <p id="d1e4521">The tracking accuracy is of similar magnitude after mean bias reduction.</p><?xmltex \hack{\clearpage}?>
</sec>
</app>

<?pagebreak page1160?><app id="App1.Ch1.S5">
  <?xmltex \currentcnt{E}?><label>Appendix E</label><title>Seasonality</title>
      <p id="d1e4534">Figure<xref ref-type="fig" rid="App1.Ch1.S5.F12"/> is provided below as a reference for Fig. <xref ref-type="fig" rid="App1.Ch1.S3.F10"/> to allow the reader to better understand reconstruction skill in the context of target seasonality.</p>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S5.F12"><?xmltex \currentcnt{E1}?><?xmltex \def\figurename{Figure}?><label>Figure E1</label><caption><p id="d1e4543">Seasonality of the target simulation for global aggregated carbon cycle variables.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f12.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>

<?pagebreak page1161?><app id="App1.Ch1.S6">
  <?xmltex \currentcnt{F}?><label>Appendix F</label><title>Schematics</title>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S6.F13"><?xmltex \currentcnt{F1}?><?xmltex \def\figurename{Figure}?><label>Figure F1</label><caption><p id="d1e4567"><bold>(a)</bold> Schematic of nudging with relaxation constant. <bold>(b)</bold> Schematic of reconstruction towards a target, where reconstructions are started from temporally independent restart files from the same simulation but 155 years later in time, i.e., 2005.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f13.png"/>

      </fig>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S6.F14"><?xmltex \currentcnt{F2}?><?xmltex \def\figurename{Figure}?><label>Figure F2</label><caption><p id="d1e4585">Schematic overview of perfect-model target reconstruction simulations showing which variables are reconstructed in which simulations.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f14.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>

<?pagebreak page1162?><app id="App1.Ch1.S7">
  <?xmltex \currentcnt{G}?><label>Appendix G</label><title>Climatology</title>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S7.F15"><?xmltex \currentcnt{G1}?><?xmltex \def\figurename{Figure}?><label>Figure G1</label><caption><p id="d1e4608">Mean climatology of the control simulations for all variables.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f15.png"/>

      </fig>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S7.F16"><?xmltex \currentcnt{G2}?><?xmltex \def\figurename{Figure}?><label>Figure G2</label><caption><p id="d1e4621">Temporal internal variability expressed as temporal standard deviation from the control simulations for all variables.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f16.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>

<?pagebreak page1163?><app id="App1.Ch1.S8">
  <?xmltex \currentcnt{H}?><label>Appendix H</label><title>Predictive skill of leaf area index (LAI)</title>
      <p id="d1e4642">We used LAI in a previous internal iteration of the paper but chose to replace LAI with cVeg. In our model JSBACH, LAI depends on climate, it is not
a carbon variable. Therefore, we did not want to use this variable in this paper. However, there is an indirect link from LAI to air–land
<inline-formula><mml:math id="M202" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux because LAI reflects droughts and the soil physics. A recent analysis focused on process-based understanding of land carbon
predictability using JSBACH indicates that soil moisture and soil carbon storage influence the air–land <inline-formula><mml:math id="M203" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux the most
<xref ref-type="bibr" rid="bib1.bibx5" id="paren.73"/>.</p>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S8.F17"><?xmltex \currentcnt{H1}?><?xmltex \def\figurename{Figure}?><label>Figure H1</label><caption><p id="d1e4672">The same as Fig. <xref ref-type="fig" rid="Ch1.F6"/> but with leaf area index (LAI) instead of carbon vegetation pools (cVeg).</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://esd.copernicus.org/articles/12/1139/2021/esd-12-1139-2021-f17.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>
  </app-group><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d1e4691">Forecast verification was performed with the Python package CLIMPRED <xref ref-type="bibr" rid="bib1.bibx3" id="paren.74"/> (<uri>https://github.com/pangeo-data/climpred/</uri>, last access: 13 October 2020 <ext-link xlink:href="https://doi.org/10.5281/zenodo.5347774" ext-link-type="DOI">10.5281/zenodo.5347774</ext-link>, <xref ref-type="bibr" rid="bib1.bibx2" id="altparen.75"/>), which was co-developed with Riley X. Brady from University of Colorado, Boulder. Scripts and data to reproduce this analysis are archived at <uri>http://hdl.handle.net/21.11116/0000-0007-A697-3</uri> <xref ref-type="bibr" rid="bib1.bibx51" id="paren.76"/>.</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e4716">AS and TI conceived the study. AS performed the simulations and analysis, created the figures, and drafted the manuscript. TI, ID, HL and VB contributed to manuscript editing and provided feedback.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e4722">The authors declare that they have no conflict of interest.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e4728">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e4734">We acknowledge funding from European Union's Horizon 2020 Research and Innovation Programme under grant agreement no. 821003 “Climate-Carbon Interactions in the Current Century (4C)”, no. 820989 “COMFORT” and no. 641816 “CRESCENDO”. Simulations were performed at the German Climate Computing Center (DKRZ). We thank Jürgen Bader for internal review.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e4739">This research has been supported by Horizon 2020 (grant nos. 821003, 820989, and 641816).<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>The article processing charges for this open-access <?xmltex \notforhtml{\newline}?> publication were covered by the Max Planck Society.</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e4750">This paper was edited by Ning Zeng and reviewed by John Dunne and one anonymous referee.</p>
  </notes><ref-list>
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